species:   Drmel
pid:       MI0000419
parent:    dme-mir-308
paralog:   
locus:     NT_033778.4:14215802-14215864
matures:   ['AAUCACAGGAUUAUACUGUGAG', 'CGCAGUAUAUUUUUGUGUUUUG']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033778.4:14215802-14215864

0 out of bounds
28 alignments
28 proper strand
27 stranded perfect matches

***********************                 ***********************
CUCGCAGUAUAUUUUUGUGUUUUGUUUCGUUUUGCAAUCCAAAUCACAGGAUUAUACUGUGAG
(((((((((((.(((((((.((((..(.((...)).)..)))).))))))).)))))))))))
-----------------------------------------AAUCACAGGAUUAUACUGUGAG l=22 a=0 c
--CGCAGUAUAUUUUUGUGUUUUG--------------------------------------- l=22 a=10 c*
--CGCAGUAUAUUUUUGUGUUUU---------------------------------------- l=21 a=15 ma
------------------------------------------AUCACAGGAUUAUACUGUGAG l=21 a=0 ma*

--CGCAGUAUAUUUUUGUGUUU----------------------------------------- l=20 a=2 
--CGCAGUAUAUUUUUGUGUUUU---------------------------------------- l=21 a=15 (ma)
--CGCAGUAUAUUUUUGUGUUUUG--------------------------------------- l=22 a=10 (c*)
--CGCAGUAUAaUUUUGUGUUUUG--------------------------------------- l=22 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
